BSC 3364 RESEARCH IN TROPICAL ECOSYSTEMS/

GLY 3630 RESEARCH IN TROPICAL ENVIRONMENTS

FALL 2003, MW 3:30-4:45, PC 432

SYLLABUS

 LAST MODIFIED 12/03/03

NOTE:  If you lose this syllabus, you can download it from the web sites of the Department of Biological Sciences or Department of Earth Sciences.

 

Course and Learning Objectives  Most courses cover the details of a particular discipline, but rarely do students come out of classes with a general comprehension of how scientific research is accomplished. This course has two learning objectives:  1) to provide the information all educated people should know about how scientific research works, using environmental science research as an example; and 2) to give students who intend to pursue careers in environmental biological science the basics of how to do research. The course’s objectives are to orient students to general scientific principles and practice in the first four weeks, and to present to students case studies in research on the topic of  Environmental Biology of the Caribbean to South Florida, for critical review and discussion. This course is designed for science majors, and in particular those in biology, geology and environmental studies. If your major is not in science, please discuss this with one of the instructors to ensure that your background will be sufficient.

 

Course Description  This course includes both lectures and group discussions. In the first four weeks, lectures cover the scientific principles and practices of doing research, including scientific methods, selecting research topics, scientific proposals and peer review, and critical thinking.  The rest of the semester will put these principles into practice with research presentations by faculty from the departments of Biological Sciences, Earth Sciences, and Environmental Studies. Students take notes on presentations and ask critical questions of speakers following their talks. The speakers are grouped into five sections by discipline: (1) Earth Sciences, (2) Evolution, (3) Marine Environmental Biology, (4) Botanical Environmental Biology, and (5) Biodiversity/Conservation. Following the speakers in each section, we have a discussion of a selected reading from that discipline. 

 

COURSE SCHEDULE

(Textbook chapters corresponding to lectures are shown)

 

Aug. 25

Introduction to research on tropical ecosystems and environments

Scientific theories, inference & philosophy (Ch. 1)  – Lee

Aug. 27

Scientific literature, critical thinking, research funding, publication (Ch. 2-3)   – Collins

Sept. 1

LABOR DAY HOLIDAY – UNIVERSITY CLOSED

Sept. 3

Good research questions, scientific measurement (Ch. 4-5)   – Lee

Sept. 8

Research design (Ch. 6) – Collins

Sept. 10

Using animals in research, philosophical challenges (Ch. 16, 18)   – Lee

Sept. 15

Data analysis (Ch. 17) – Collins

Sept. 17

EXAM on textbook 

Sept. 22

Earth sciences:  Prof. Gren Draper, The Geological Setting for Caribbean Environments

Sept. 24

Earth sciences:  Prof. Bill Anderson,  Stable Isotope Biogeochemistry: understanding paleoclimate change

Sept. 29

Earth sciences:  Prof. Laurie Collins,  Seagrass History of Florida Bay

Oct. 1

Earth sciences Discussion of scientific article: Late Cenozoic Evolution of the Neotropical Mammal Fauna

Oct. 6

Evolution:  Prof. Javier Francisco-Ortega,  Macromolecules, plants, and islands

Oct. 8

Evolution:  Prof. Joel Trexler,  Population genetics of Everglades fish:  CANCELLED

Oct. 13

Evolution Discussion of scientific article:  Phylogeography of the West Indian manatee:  How many populations and how many taxa?

Oct. 15           

Marine environmental biology:  Prof. Walter Goldberg,  The structure, ecology and distribution of coral reefs

Oct. 20

Marine environmental biology:  Prof. Jim Fourqurean,  Seagrasses of South Florida and the Caribbean

Oct. 22

Marine environmental biology: Prof. Chris Brown, Adaptation of fish to changes in the aquatic environment

Oct. 27

Marine-terrestrial transition:  Prof. Evelyn Gaiser, The role of periphyton mats in the Everglades ecosystem

Oct. 29

Marine environmental biology Discussion of scientific article: Historical overfishing and the recent collapse of coastal ecosystems

Nov. 3

Botanical environmental biology:  Prof. David Lee,  How light intensity and quality determine where and how plants grow

Nov. 5

Botanical environmental biology:  Prof. Stephen Oberbauer,  Tropical and subtropical trees and climate change

Nov. 10

Botanical environmental biology:  Prof. Suzanne Koptur,  Effects of Key Deer Herbivory on Understory Plants in Lower Keys, Pine Rockland

Nov. 12

Botanical environmental biology Discussion of scientific article: Keeping up with the Neighbours: Phytochrome sensing and other signalling mechanisms

Nov. 17

Biodiversity/Conservation:  Prof. Brad Bennett,  Ethnobotany of South Florida Indians

Nov. 19

Biodiversity/Conservation:  Prof. Mike McClain, Nitrogen stocks and fluxes in riparian and upland montane forests of the Andean Amazon Basin

Nov. 24

Biodiversity/Conservation:  Prof. Maureen Donnelly,  Reptiles and amphibians of Central America

Nov. 26

Biodiversity/Conservation:  Prof. Joel Heinen:  CITES in Nepal

Dec. 1

Biodiversity/Conservation Discussion of scientific article:  On the expansion of species protection in Nepal: Advances and pitfalls of new efforts to implement and comply with CITES

Dec. 3

Review

Dec. 8

FINAL EXAM, M 3:30-6:15

 

Note about the exam times:  In keeping with university policy, we will try to make accommodations for students who wish to observe their religious holidays. Students should make these requests known at the beginning of the semester.

 

 

INSTRUCTORS

Department

Email address

Phone (305)

Office Hours

Dr. David Lee

Dept. Biological Sciences

leed@fiu.edu

348-3111

 announced in class

Dr. Laurie Collins

Dept. Earth Sciences, Dept. Biological Sciences

collinsl@fiu.edu

348-1732

M 2:00-3:30,.

T 8:30-10:00, PC 435

 

 

Course Policies –  You are expected to be on time to class, and to stay the full period. Each student is expected to participate in discussions and ask questions of lecturers, although not in every class. Read the section below on “In-class speaking and active, responsive listening.”

 

You are expected to maintain high standards of academic honesty. Any student found in violation of these standards will earn an automatic F and be reported to the Deans Office, no exceptions made. In accordance with FIU's policy on academic honesty, as set forth in Section 2.44 of the Academic Affairs Policies and Procedures Manual (http://academic.fiu.edu/docs/aapolicies.htm), it is expected that students in  BSC-3364 and GLY-3630 will not submit the academic work of another as their own. Additional discussion of academic honesty and integrity may be found in the Manual.

 

All cell phones and beepers must be turned off during class, unless they are set to vibrate only.

 

Dropping a Class –  Students who wish to drop a class for the fall 2003 semester must do so by 1 p.m. on August 30 if they do not wish to incur a financial penalty, or by 1 p.m. on Oct. 18 to receive a DR grade for the course.

 

Textbook – Fred Leavitt, 2001, “Evaluating Scientific Research, Separating Fact From Fiction,” Prentice Hall, ISBN 0-13-012845-7. This costs about $30 new in the bookstore.

 

Reading scientific articles – One article will be assigned for each of the DISCUSSION classes (5 total), and one reading will be recommended by each speaker (15 total). They will be available as downloadable files through the library’s Course Reserves listing. The articles assigned for DISCUSSIONs will be general scientific publications on the subject of one of the five disciplines. We will discuss the objectives, results, implications for larger questions, and failures of these articles. DISCUSSIONs are meant to give you practice in critical thinking and voicing your views. The speakers’ readings are meant to orient you to the subject matter before the presentations, so you are expected to read the article assigned by each speaker BEFORE the lecture.

 

Grading Criteria – The breakdown of points earned during the semester is as follows: 

EXAM (Sept. 23) = 25 points, FINAL EXAM = 35 points, CLASS PARTICIPATION = 40 points.

Both exams will have an essay format. The first will cover material from the textbook and lectures pertaining to the book. The final exam is not comprehensive and will cover only the lectures and discussions on research given after the first exam. The Final Exam is “open-book” so you may bring notes and articles to the final for use during the exam.

Determination of final grades by points earned:  A=90-100 points, B=80-89 points, C=70-79 points, D=60-69 points, F=0-59 points.