Chromatin

Ciro Rivera-Casas awarded Ph.D. prize and postdoc fellowship

Posted by | Awards, Chromatin, Education, FIU, Histones | No Comments

Ciro Rivera-Casas (Chromevol’s former Ph.D. student at the University of A Coruna) has been awarded the University’s special prize for his Ph.D. dissertation focused on the characterization of chromatin and histone variants in marine invertebrates. But the celebration is double, as Ciro has been also awarded a 2 year postdoctoral fellowship funded by the Ramon Areces Foundation to join Chromevol at FIU. Congratulations sir!!Chromevol_Picture

Dr. Eirin-Lopez joins the journal Agri Gene as Associate Editor

Posted by | Chromatin, Epigenetics, Genetics, Research | No Comments

Agri Gene publishes papers that focus on the regulation, expression, function and evolution of genes in crop plants, farm animals, and agriculturally important insects and microorganisms. Agri Gene strives to be a diverse journal and topics in multiple fields will be considered for publication so long as their main focus is on agriculturally important organisms (plants, animals, insects, or microorganisms). Although not limited to the following, some examples of potential topics include:

Gene discovery and characterization.
Genetic markers to guide traditional breeding.
Genetic effects of transposable elements.
Evolutionary genetics, molecular evolution, population genetics, and phylogenetics.
Profiling of gene expression and genetic variation.
Biotechnology and crop or livestock improvement.
Genetic improvement of biological control microorganisms.
Genetic control of secondary metabolic pathways and metabolic enzymes of crop pathogens.
Transcription analysis of beneficial or pest insect developmental stages.

Dr. Eirin-Lopez at Ocean Life Series 2016

Posted by | Chromatin, Conference, corals, DNA, Education, Epigenetics, FIU, Marine Biology, Outreach | No Comments

Dr. Eirin-Lopez will be presenting the conference “The Epigenetics Revolution Reaches the Ocean” next Friday, April 15th, at the Murray E. Nelson Government Center in Key Largo, FL. A meet & greet will take place at 6 pm, followed by the conference at 7 pm. We’re looking forward to meet our Friends Of The Key Largo Cultural Center.

 

Chromevol is back from ACCEC 2015, Asilomar chromatin is back!

Posted by | Cellular biology, Chromatin, Conference, Epigenetics, Histones, Research | No Comments

Last week we attended the 37th Asilomar Chromatin, Chromosomes and Epigenetics Conference (asilomarchromatin.com) in Pacific Grove, CA. It was a great opportunity to interact with old and new colleagues as well as to enjoy the beautiful setting of this conference in the Monterey peninsula. We had the chance of presenting our research in three talks, including our latest work about histone macroH2A in invertebrates (now under review), network analyses in environmental epigenetic responses and chromatin specialization in marine organisms. Overall it was a great experience (and we had the chance of experiencing the winter for a few days before returning to south Florida!). We’re looking forward for next year’s edition already!

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Asilomar Chromatin, Chromosomes and Epigenetics Conference 2015

Posted by | Chromatin, Conference, Epigenetics, Histones, Research | No Comments

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The 37th edition of the Asilomar Chromatin, Chromosomes and Epigenetics Conference (ACCEC) is rolling and has renewed energies! Dr. Eirin-Lopez has joined the organizing committee of this meeting. Following a long scholar tradition, we’ll be gathering next December in Asilomar, Pacific Grove (CA) to discuss the latest advances in the field. Please check the revamped website for the meeting at:

website: asilomarchromatin.com

facebook: facebook.com/asilomarchromatin

twitter: twitter.com/asilomar_accec

ACCEC is an extraordinary opportunity for graduate students, postdocs and PIs to present their work (oral communications only!) in a relaxed environment in front of a diverse audience. The present edition has special focus on epigenetics and nutrition, among other topics.

Congratulations to Dr. Rivera-Casas!

Posted by | Awards, Chromatin, Evolution, Histones, Marine Biology, Research | No Comments

Yesterday Chromevol’s graduate student Ciro Rivera-Casas defended (with great success!) his Ph.D. dissertation entitled “Histone variants in marine invertebrates: chromatin analysis and characterization of macroH2A and H2A.Z.2 variants in bivalve molluscs”. Ciro joined Chromevol in 2010 and is the second Ph.D. student graduating under Dr. Eirin-Lopez’s supervision. We want to make you all participants of his achievement and we hope he can visit us soon in Miami to tell us more about his research!

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Environmental epigenetics meets marine invertebrates

Posted by | Chromatin, DNA, Epigenetics, Histones, Marine Biology, Omics, Toxicology | No Comments

Environmental epigenetics investigates the cause-effect relationships between specific environmental factors and the subsequent epigenetic modifications triggering adaptive responses in the cell. Given the dynamic and potentially reversible nature of the different types of epigenetic marks, environmental epigenetics constitutes a promising venue for developing fast and sensible biomonitoring programs. Indeed, several epigenetic biomarkers have been successfully developed and applied in traditional model organisms (e.g., human and mouse). Nevertheless, the lack of epigenetic knowledge in other ecologically and environmentally relevant organisms has hampered the application of these tools in a broader range of ecosystems, most notably in the marine environment.

Fortunately, that scenario is now changing thanks to the growing availability of complete reference genome sequences along with the development of high-throughput DNA sequencing and bioinformatic methods. Altogether, these resources make the epigenetic study of marine organisms (and more specifically marine invertebrates) a reality.

vicky_600x400rodri_600x400We have built on this knowledge to develop a review/perspectives paper on this topic, recently published in the journal Marine Pollution Bulletin. This work (conducted by Victoria Suarez-Ulloa and Rodrigo Gonzalez-Romero, grad student and postdoc at Chromevol, respectively) provides a timely perspective highlighting the extraordinary potential of environmental epigenetic analyses as a promising source of rapid and sensible tools for pollution biomonitoring, using marine invertebrates as sentinel organisms. This strategy represents an innovative, groundbreaking approach, improving the conservation and management of natural resources in the oceans.

 

Ciro Rivera-Casas’ PhD dissertation is finished!

Posted by | Chromatin, DNA, Education, Genetics, Histones, Molecular biology, Research | No Comments

Our own Ciro Rivera-Casas is about to defend his Ph.D. dissertation! we’re really excited after checking the final printed copy of his work! During the last 5 years, Ciro has been focused on the characterization of histone variants in marine invertebrates and the methodologies for the study of chromatin in these organisms. Along the way, he has discovered several interesting and unexpected features of these proteins that soon will be published as part of his Ph.D. work. Congratulations to Ciro and best of luck for the defense of his work this summer!

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Thanks to Dr. Steven Roberts for his visit and a great seminar last week at FIU

Posted by | Chromatin, DNA, Education, Evolution, FIU, Omics | No Comments

Last week we had the visit of Dr. Steven Roberts as our invited speaker within the “2015 Worlds Ahead Marine Sciences Seminar Series”. In addition to enjoying a great seminar, we had the chance of exchanging many exciting ideas about future projects addressing the epigenetic basis of environmental responses and adaptation in marine invertebrates. Many thanks Steven!

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