Chromatin

Marine Sciences seminar on DNA methylation by Dr. Steven Roberts (UWashington)

Posted by | Chromatin, DNA, FIU, Omics, Research | No Comments

Next week we’ll have the visit of Dr. Steven Roberts as invited speaker within FIU’s “2015 Worlds Ahead Marine Sciences Seminar Series”. Dr. Roberts is an Associate Professor in the School of Aquatic and Fishery Sciences at the University of Washington (http://faculty.washington.edu/sr320/), where his research focuses on characterizing physiological responses of marine organisms to environmental change. In his seminar he will provide clues to answer the following question: “Does DNA methylation facilitate phenotypic plasticity in marine invertebrates?“.

We really think it does!!

The Chromevol group has many common interests with Dr. Roberts’ research goals! we really look forward to his seminar! The date is Thursday April 23rd at 12pm and the place is room MSB-105 at BBC Campus. The seminar will be followed by a “end-of-semester” BBQ, you’re all invited!

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2015 Glaser week finished

Posted by | Chromatin, Education, FIU, Histones | No Comments

This week we have been honored by the visit of Dr. Steven Henikoff (Fred Hutchinson Cancer Research Center, Howard Hughes Medical Institute, Seattle) within the framework of the 2015 Distinguished Glaser Seminar Series at FIU. During six days, Dr. Henikoff has provided faculty and students with a depth and breadth into chromatin and epigenetics research, making emphasis on the latest developments in this exciting discipline. From FIU we want to thank Dr. Henikoff for his collegiality, rapport and kindness during his visit.

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As part of the social events in the Glaser Seminar program we had the opportunity of visiting the Everglades National Park under the expert guidance of Dr. Jennifer Richards (r), with Steven Henikoff (c) and Chema Eirin-Lopez (l).

Distinguished Glaser Seminar 2015 – Epigenetics & Chromatin – Dr. Steven Henikoff

Posted by | Awards, Chromatin, DNA, Education, FIU, Histones, Research | No Comments

Dates, time, and place January 26 – 30, 2015, noon to 1:00 PM in room WC130 on the FIU Modesto A. Maidique Campus (MMC), simultaneously broadcast to room MSB105 on the Biscayne Bay Campus (BBC). [Wednesday, January 28 the presentation will be broadcast from BBC to MMC.] A 30-minute period will be available for discussion following each presentation.

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Dr. Steven Henikoff
Fred Hutchinson Cancer Research Center/Howard Hughes Medical Institute/University of Washington

Member of the National Academy of Sciences and Fellow of the American Association for the Advancement of Science.

Editor-in-Chief of the journal “Epigenetics & Chromatin”

Link to Dr. Henikoff laboratory web site

Link to Dr. Henikoff National Academy of Sciences profile

BACKGROUND

For more than a century histone proteins, composed of a polymer known as chromatin, have been studied for their role in the physical organization of chromosomes. More recently interest in this complex has been greatly rekindled by the recognition of chromatin’s role in gene regulation, including acquired traits that are inherited without involving changes in the DNA sequence. In other words, chromatin plays a central role in the configuration and propagation of epigenetic information across generations. The rapid increases in “omic” data and analytical methods have provided new approaches for understanding the interaction between genetic and epigenetic information, adding a layer of complexity in DNA regulation that, while still poorly understood, will clearly be important for understanding how cells adapt to changes in external conditions.

The research of Dr. Steve Henikoff (BS University of Chicago, PhD Harvard University) and his team seeks to understand this elusive relationship between chromatin and epigenetic inheritance. Their work has applied pioneering research approaches combining molecular biology, genetics, evolution and bioinformatics to study the different mechanisms potentially encoding epigenetic information (i.e., histone variants and their chemical modifications, DNA methylation, transcription factor regulatory networks, among others). Among these works, the characterization of the mechanisms governing centromeric chromatin structure and evolution are specially groundbreaking, challenging the classic notion stating that our whole genome, our chromosomes, are filled up with nucleosomes and they’re all octamers. In recent years they have expanded their scope from chromatin structure, dynamics and evolution to interactions with other components of the epigenome including nucleosome remodelers, transcription factors and RNA polymerase II*.

LECTURE TOPICS

Monday, Jan 26: Chromatin dynamics.

Tuesday, Jan 27: Transcription and chromatin.

Wednesday, Jan 28: Centromeric chromatin.

Thursday, Jan 29: Chromatin and cancer.

Friday, Jan 30: Chromatin and centromere evolution.

*From the Henikoff lab web site.

Asilomar Chromatin and Chromosomes Conference 2014

Posted by | Bioinformatics, Cellular biology, Chromatin | No Comments

Last week we had the chance of presenting some of our most recent work at the 36th  Asilomar Chromatin and Chromosomes Conference (ACCC) in Pacific Grove, CA. It’s been great being back in this meeting and interact with old and new colleagues interested in the study of chromatin. Next year will mark a turning point for ACCC, with a renewed organization and structure that we’re sure will be appealing to a broad range of scientists, specially students. More information soon!

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Chromevol’s study of HMG proteins published in Molecular Biology and Evolution

Posted by | Chromatin, Evolution, Research | No Comments

The results of one of our most recent projects have just been published in the latest issue of the highly influential journal “Molecular Biology and Evolution” (IF 14.308). In this paper (Evolution of High Mobility Group Nucleosome-binding -HMGN- proteins and its implications for vertebrate chromatin specialization) we focus our attention in a family of proteins known as High Mobility Group (HMG), and more specifically to those binding directly to nucleosomes in the chromatin (HMGN). Throughout this work we provide useful information to our understanding of the specialization imparted on chromatin metabolism by HMGNs, especially on the evolutionary mechanisms underlying their functional differentiation in vertebrates.

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When it comes to variants, every amino acid matters!

Posted by | Awards, Cellular biology, Chromatin, DNA, Histones, Research | No Comments
The prestigious journal Nature Reviews in Genetics has just published a paper that will probably become a reference for all scientists broadly interested in Epigenetics and most specifically in the role of histone variants in the regulation of pretty much all processes inherent to DNA metabolism. We are specially proud that Chromevol’s research on the characterization of H2A.Z variants has been cited in the present paper. Click in the image below to get a copy of this work.

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Environmental application of the “omic” study of marine organisms

Posted by | Chromatin, Histones, Molecular biology, Omics, Research | No Comments

Our latest work entitled “Bivalve omics: state of the art and potential applications for the biomonitoring of harmful marine compounds” has been published last week in the journal “Marine Drugs”. This work is part of Victoria Suarez-Ulloa’s Ph.D. project, and aims to provide a timely perspective on the available resources and on the current and prospective applications for the biomonitoring of harmful marine compounds.

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