Toxicology

Congrats to Vicky Suarez-Ulloa on completing a great PhD!!!

Posted by | DNA, Epigenetics, FIU, Graduate student, Marine Biology, Omics, Oysters, Red Tides, Research, Toxicology | No Comments

Victoria Suarez-Ulloa defended her PhD dissertation last week with perfect scores!, this completes a very productive stage in her academic trajectory with 10 papers published, several presentations in international conferences and most importantly, a postdoctoral position already lined up in Europe to continue working with population epigenomics. Vicky, we’re really proud of you and wish you the best for the future!!!

Eastern oyster epigenetics work accepted in Aquatic Toxicology!

Posted by | DNA, Epigenetics, FIU, Histones, Marine Biology, Oysters, Red Tides, Toxicology | No Comments

Our latest work “Effects of Florida Red Tides on histone variant expression and DNA methylation in the Eastern oyster Crassostrea virginica” has been accepted for publication in the journal Aquatic Toxicology (3.557 impact factor, ranked 3/104 in Marine & Freshwater Biology). The unformatted version of the paper is available at http://www.sciencedirect.com/science/article/pii/S0166445X17300760 and HERE. This work was developed by our lab at FIU (Environmental Epigenetics group, Dept. Biology, Institute of Water and Environment, CREST Center for Aquatic Chemistry and Environment) in collaboration with the Ecotoxicology Lab (SERC) and the University of Vigo, in Spain. We also collaborated with Rookery Bay National Estuarine Research Reserve during this research. Our results provide a basis to better understand how Florida Red Tides affect oysters and epigenetic mechanisms participating in their responses to environmental stress, opening new avenues to incorporate environmental epigenetics approaches into management and conservation programs. We are currently building on this work in collaboration with Mote Marine Lab as well as with aquaculture stakeholders in south and central Florida.

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Back from SETAC world 2017 in Orlando

Posted by | Conference, DNA, Epigenetics, Graduate student, Marine Biology, Oysters, Red Tides, Research, Toxicology | No Comments

Last week we had the chance of participating in a session focused on environmental epigenetics in the world congress of the Society of Environmental Toxicology and Chemistry. It was really great to see so many people interested in using epigenetic approaches to address environmental problems, involving a wide range of new model organisms encompassing environmental and ecological relevance. From our side, we presented works investigating the epigenetic modifications involved in responses to Florida Red tides in Eastern oysters (talk by Dr. Eirin-Lopez), the different genetic networks activated during responses (Victoria Suarez-Ulloa) as well as the first results from our most recent efforts to elucidate the epigenetic mechanisms underlying coral responses to nutrient stress in the ocean (Javier Rodriguez-Casariego). Overall, we left with a great feeling and looking forward to see environmental epigenetics grow and its links with ecology, toxicoloy and physiology being further explored in the future!img_4039

FIU Receives NSF Grant to Establish Center for Aquatic Chemistry and the Environment

Posted by | Awards, Marine Biology, Research, Toxicology | No Comments

Floridakeys-nasaWith a $5,000,000 grant from the National Science Foundation support (Division Of Human Resource Development), Florida International University will establish the Center for Aquatic Chemistry and the Environment (CREST). Our group participates in this 5-year project led by Biology Professor Todd A. Crowl.

Human-derived environmental contaminants are recognized as having significant effects on ecosystems and biota as well as on human wellbeing. It is critical to understand the biogeochemical processes that govern the fate of these compounds and their impacts on the ecosystem. Center for Aquatic Chemistry and the Environment research will address the sources, transport, transformation and ecosystem responses to contaminants, pollutants and other natural stressors, under changing land-use and environmental conditions. The proposed research will advance current efforts on the biological effects, transport, transformation and distribution of contaminants in the environment into new collaborative research areas that investigate the sources and transport of contaminants and pollutants in aquatic systems. The Center articulates three research subprojects organized around environmental chemistry, biogeochemistry, ecology and data synthesis and modeling as they pertain to regional water resources. In doing so, the Center for Aquatic Chemistry and the Environment will establish innovative opportunities for students to experience authentic and socially relevant environmental research and foster their development as future STEM professionals.

NSF Award Page

New Ph.D. student Javier Rodriguez Casariego joins Chromevol next fall

Posted by | Epigenetics, FIU, Genetics, Graduate student, Marine Biology, Oysters, Red Tides, Toxicology | No Comments

Javier graduated from the University of Havana, Cuba (B.S. Biology, 2008; M.S. Marine Biology, 2012) and has worked as a research scientist for the Marine Research Center at this institution until his transition to FIU. During the last 2 years he acted as senior research technician for FIU’s Ecotoxicology Laboratory before joining the Biology Graduate program. Javier is already participating in several Chromevol projects examining environmental epigenetic responses in marine invertebrates. His collaboration has been instrumental for the simulation of HAB episodes using Eastern oysters last summer (he presented preliminary results about this work in the Biosymposium last month), as well as for the analysis of coral samples exposed to nutrient loading. Those preliminary results will constitute the conceptual basis for his Ph.D. project. Welcome!!!

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Our last work has been just published today on Peer J!

Posted by | Bioinformatics, DNA, Marine Biology, Omics, Red Tides, Research, Toxicology | No Comments

Victoria (Vicky) Suarez-Ulloa, a Graduate Student at Chromevol, has led our last paper entitled “Unbiased high-throughput characterization of mussel transcriptomic responses to sublethal concentrations of the biotoxin okadaic acid”, published today in the journal Peer J. In this work we have collaborated with researchers from UK and Spain characterizing the genes involved in responses to the effects of marine biotoxins. In the pictures below you can see the now traditional “hanging ceremony” of the paper reprint below the corresponding poster (presented at the Gordon Conference in Ecological and Evolutionary Genomics last summer) in the hallway near our lab. Vicky was fortunate enough to count with the help and indications of three gentleman during this operation.

Congrats!!!

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It’s all too much for me to take …

Posted by | Cytogenetics, DNA, Genetics, Marine Biology, Red Tides, Research, Toxicology | No Comments

… when it comes to marine biotoxins!!!

For more than a decade now, we have been studying the effect of pollution on the genome of marine invertebrates, notably the genotoxic effect of marine biotoxins produced during harmful algal blooms. However, while the toxic effect of these compounds is well known, little is known about how much of them is needed and for how long to produce DNA damage. That is precisely what our own Veronica Prego-Faraldo has been studying during the last 2 years.

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In a paper published today in the Journal of Toxicology and Environmental Health, Part A (78:814-824. Jul. 2015. View PDF), she provides in vitro evidence supporting the harmful effect of the biotoxin okadaic acid a low concentrations in specific tissues of bivalve molluscs. This work constitutes the first report investigating the early genotoxic effect of this biotoxin, which soon will be followed by complementary in vivo analyses in the mussel Mytilus.

Environmental epigenetics meets marine invertebrates

Posted by | Chromatin, DNA, Epigenetics, Histones, Marine Biology, Omics, Toxicology | No Comments

Environmental epigenetics investigates the cause-effect relationships between specific environmental factors and the subsequent epigenetic modifications triggering adaptive responses in the cell. Given the dynamic and potentially reversible nature of the different types of epigenetic marks, environmental epigenetics constitutes a promising venue for developing fast and sensible biomonitoring programs. Indeed, several epigenetic biomarkers have been successfully developed and applied in traditional model organisms (e.g., human and mouse). Nevertheless, the lack of epigenetic knowledge in other ecologically and environmentally relevant organisms has hampered the application of these tools in a broader range of ecosystems, most notably in the marine environment.

Fortunately, that scenario is now changing thanks to the growing availability of complete reference genome sequences along with the development of high-throughput DNA sequencing and bioinformatic methods. Altogether, these resources make the epigenetic study of marine organisms (and more specifically marine invertebrates) a reality.

vicky_600x400rodri_600x400We have built on this knowledge to develop a review/perspectives paper on this topic, recently published in the journal Marine Pollution Bulletin. This work (conducted by Victoria Suarez-Ulloa and Rodrigo Gonzalez-Romero, grad student and postdoc at Chromevol, respectively) provides a timely perspective highlighting the extraordinary potential of environmental epigenetic analyses as a promising source of rapid and sensible tools for pollution biomonitoring, using marine invertebrates as sentinel organisms. This strategy represents an innovative, groundbreaking approach, improving the conservation and management of natural resources in the oceans.

 

The age of toxic tides

Posted by | Cellular biology, Cytogenetics, DNA, Research, Toxicology | No Comments

Toxic algal blooms are responsible for huge economic losses and deep ecological impacts in coastal areas, threatening fisheries and aquaculture industries. Many of these episodes (e.g., Florida red tides) are caused by the explosive proliferation of toxin-producing dinoflagellates in the phytoplankton, causing serious intoxications in human consumers of shellfish. While toxic tides occur naturally in the oceans, their frequency and toxicity is increasing as a consequence of pollution and sea level rise (among other factors), challenging marine ecosystems.

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Yet, we don’t know much about how these biotoxins affect marine life, specially when it comes to constant exposure to sublethal concentrations of these compounds. The work of our own Veronica Prego-Faraldo is contributing to clarify that question. In her most recent paper (Journal of Toxicology and Environmental Health, Part A), she has studied the cytological effects of the biotoxin okadaic acid on mussels in vitro. Her findings show heterogeneous sensitivities to this biotoxin across different mussel tissues, specially in the case of gills. Altogether, these results confirm the genotoxic consequences of exposure to sublethal concentrations of okadaic acid. Furthermore, they provide clues to develop biomonitoring strategies able to efficiently assess the effects of this biotoxin in natural populations.