No |
Year |
Authors, Title, Journal |
Invited Papers in Professional Journals |
||
2020 | ||
102 |
Mathee K, Cickovski T, Deoraj A, Stollstorff M, Narasimhan G. The gut microbiome and neuropsychiatric disorders: implications for attention deficit hyperactivity disorder (ADHD). J Med Microbiol. 2020 Jan;69(1):14-24. doi: 10.1099/jmm.0.001112. Review. PMID:31821133 |
|
2018 | ||
101 |
R. Mittal, J.M. Parrish, M. Soni, J. Mittal, and K. Mathee. Microbial otitis media: recent advancements in treatment, current challenges and opportunities. Journal of Medical Microbiolgy Oct;67(10):1533. doi: 10.1099/jmm.0.000810. |
|
100 |
S. Dhar, H. Kumari, D. Balasubramanian, and K. Mathee. Cell-wall recycling and synthesis in Escherichia coli and Pseudomonas aeruginosa — their role in the development of resistance. Journal of Medical Microbiolgy 67(1):1-21. doi: 10.1099/jmm.0.000636. Epub 2017 Nov 29. Review. |
|
2016 | ||
99 |
V. Aguiar-Pulido, W. Huang W, V. Suarez-Ulloa, T. Cickovski, K. Mathee, and G. Narasimhan. Metagenomics, metatranscriptomics, and metabolomics approaches for microbiome analysis. Evol Bioinform Online. May 12;12(Suppl 1):5-16. doi:10.4137/EBO.S36436. eCollection 2016. Review. |
|
2015 | ||
98 |
K. Mathee, L.L. Silver, and G. Tatke G. 70th Anniversary Collection for the Microbiology Society: Journal of Medical Microbiology. Journal of Medical Microbiology 64(12):1457-61. doi: 10.1099/jmm.0.000186. |
|
97 |
R. Mittal, C. V. Lisi, R. Gerring, J. Mittal, K. Mathee, G. Narasimhan, R. K. Azad, Q. Yao, M. Grati, D. Yan, A.A. Eshraghi, S.I. Angeli, F.F. Telischi, X-Z. Liu. Current concepts in the pathogenesis and treatment of chronic suppurative otitis media. Journal of Medical Microbiology 64(10):1103-16. doi: 10.1099/jmm.0.000155. Epub 2015 Aug 5. [PR] |
|
96 |
H. Kumari, D. Balasubramanian, and K. Mathee. Pseudomonas aeruginosa AmpR: An acute-chronic switch regulator. Pathogens and Diseases Mar;73(2):1-14. doi: 10.1111/2049-632X.12208. Epub 2015 Feb 26. [PR] |
|
2014 | ||
95 |
R. Mittal, J. Kodiyan, R. Gerring, K. Mathee, J-D Li, M. Grati & X.Z. Liu. Role of innate immunity in the pathogenesis of otitis media. International Journal of Infectious Diseases 259-67. doi: 10.1016/j.ijid.2014.10.015. Epub 2014 Nov 5. [PR] |
|
2012 | ||
94 |
L. Schneper, N. Maricic, and K. Mathee. Anti-quorum sensing, anti-bacterial, and immunomodulatory properties of Panax ginseng. International Journal of Biomedical and Pharmaceutical Sciences 6:11-24. [PR] |
|
2010 | ||
93 |
K. F. Kong, L. Schneper, and K. Mathee. Beta-lactam antibiotics: from antibiosis to resistance and bacteriology. Review. Acta Pathologica, Microbiologica, et Immunologica Scandinavica 118(1):1-36. [PR]
|
|
2009 | ||
92 |
M. Doud, E. Zeng, L. Schneper, G. Narasimhan, K. Mathee. Approaches to analyzing dynamic microbial communities such as those seen in cystic fibrosis lung. Human Genomics 3(3):246-256. [PR] |
|
2006 | ||
91 |
S.Z. Miller, S. King, and K. Mathee. Forensic DNA analysis: An overview of human DNA analysis. International Journal of Forensic Science (Revista de Ciencias Forenses) 1:31-38. [Non PR] |
|
2003 | ||
90 |
K. Mathee and G. Narasimhan. Detection of DNA-binding helix-turn-helix motifs in proteins using pattern dictionary method. Methods in Enzymology 370:250-264. [Non PR] |
|
1998 | ||
89 |
K. Hughes, and K. Mathee. The anti-sigma factors. Annual Review of Microbiology 52:231-286. [Non PR] |
|
Peer Reviewed Research Articles |
||
2020 | ||
94 |
D. Ruiz-Perez, J Lugo-Martinez, N. Bourguignon, K. Mathee, B. Lerner, Z. Bar-Joseph, and G. Narasimhan. Dynamic Bayesian networks for integrating multi-omics microbiome data. |
|
93 |
M. R. Sazal, K. Mathee, D. Ruiz-Perez, T. Cickovski, G Narasimhan. Inferring directional relationships in microbial communities using signed Bayesian networks. In Press. |
|
2019 | ||
92 |
D. Ruiz-Perez, Guan, P. Madhivanan, K. Mathee, and G. Narasimhan. So, you think you can PLS-DA? 2-page abstract published in IEEE 8th International Conference on Computational Advances in Bio and medical Sciences (ICCABS – 2018). In Press. |
|
2018 | ||
91 |
C. Delgado, L. Florez, I. Lollett, C. Lopez, S. Kangeyan, D. Smith, H. Kumari, M. Stylianou, RJ. Smiddy, L. Schneper, RT. Sautter, G. Szatmari, and K. Mathee. Pseudomonas aeruginosa regulated intramembrane proteolysis (RIP): protease MucP can overcome mutations in the AlgO periplasmic protease to restore alginate production in nonmucoid revertants. Journal of Bacteriology Jul 25;200(16). pii: e00215-18. doi: 10.1128/JB.00215-18. Print Aug 15. PMID:29784885 |
|
90 |
S. Pandey, C. Delgado, L. Florez, H. Kumari, and K. Mathee. Outer membrane protein LptD (PA0595) plays a role in the regulation of alginate synthesis in Pseudomonas aeruginosa. Journal of Medical Microbiology doi: 10.1099/jmm.0.000752. Epub 2018 Jun 20. PMID: 29923820 |
|
2016 | ||
89 |
R. Mittal, C.V. Lisi, H. Kumari, M. Grati, P. Blackwelder, D. Yan, C. Jain, K. Mathee, P.H. Weckwerth, X.Z. Liu XZ. Otopathogenic Pseudomonas aeruginosa enters and survives Inside macrophages. Frontiers Microbiology 7:1828. eCollection 2016. |
|
88 |
M. Jani, K. Mathee, and R.K. Azad. Identification of novel genomic islands in Liverpool epidemic strain of Pseudomonas aeruginosa using segmentation and clustering. Frontiers Microbiology 7:1210. doi: 10.3389/fmicb.2016.01210. eCollection 2016. |
|
87 |
M. Lee*, S. Dhar*, S. De Benedetti, D. Hesek, B. Boggess, B. Blázquez |
|
2015 | ||
86 |
D. Zincke, D. Balasubramanian, L.L. Silver, and K. Mathee. Characterization of a carbapenem-hydrolyzing enzyme, PoxB, in Pseudomonas aeruginosa PAO1. |
|
85 |
G. Tatke, H. Kumari, E. Silva-Herzog, L. Ramirez, and K. Mathee. Pseudomonas aeruginosa MifS-MifR two competent system is specific for a–ketoglutarate utilization. PLOS One Jun 26;10(6):e0129629. doi: 10.1371/journal.pone.0129629. |
|
84 |
M. Fernandez, J.D. Riveros, M. Campos, K. Mathee and G. Narasimhan. Microbial “social networks”. BMC Genomics 16(Suppl 11): S6 (Special Issue). |
|
2014 | ||
83 |
O. Caille, D. Zincke, M. Merighi, D. Balasubramanian, H. Kumari, K-F. Kong, E. Silva-Herzog, G. Narasimhan, L. Schneper, S. Lory, and K. Mathee. Structural and functional characterization of Pseudomonas aeruginosa global regulator AmpR. Journal of Bacteriology Nov; 196(22): 3890–3902. doi |
|
82 |
H. Kumari, D. Balasubramanian, D. Zincke, and K. Mathee. Pseudomonas aeruginosa AmpR plays a role in transient cross-resistance to ß-lactams and non-ß-lactams upon preexposure to subinhibitory concentrations of antibiotics. Journal of Medical Microbiology Apr; 63(Pt 4): 544-55 Jan 25. doi: 10.1099/jmm.0.070185-0. Featured in MDLinx web site (www.MDLinx.com). MDLinx is the world’s most up-to-date index of articles that matter in the daily lives of physicians and other healthcare professionals. |
|
81 |
H. Kumari*, S.K. Murugapiran*, D. Balasubramanian, L. Schneper, M. Merighi, D. Sarracino, S. Lory, and K. Mathee. LTQ-XL mass spectrometry proteome analysis expands the Pseudomonas aeruginosa AmpR regulon to include cyclic di-GMP phosphodiesterases and phosphoproteins, and identifies novel open reading frames. Journal of Proteome Research Jan 16; 96:328-42. doi: 10.1016/j.jprot.2013.11.018. Epub 2013 Nov 28. [* – contributed |
|
80 |
D. Balasubramanian, H. Kumari, M. Jaric, M. Fernandez, K.H. Turner, S.L. Dove, G. Narasimhan, S. Lory and K. Mathee. Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat-shock and the oxidative stress response. Nucleic Acids Research 42(2):979-98. doi: 10.1093/nar/gkt942. Epub 2013 Oct 23. |
|
79 |
D. Balachandar, M.S. Doud, L. Schneper, D.E. Mills, and K. Mathee. Long-term organic nutrient management fosters the eubacterial community diversity in the Indian semi-arid alfisol as revealed by length heterogeneity-PCR. Communications in Soil Science and Plant Analysis 45:189-203. |
|
2013 | ||
78 |
M. Jaric, J. Segal, E. Silva-Herzog, L. Schneper, K. Mathee, and G. Narasimhan. Better primer design for metagenomic applications by increasing taxonomic distinguishability. BMC Proceedings 7(Suppl 7):S4 doi:10.1186/1753-6561-7-S7-S4. |
|
77 |
D. Balasubramanian, L. Schneper, H. Kumari and K. Mathee. |
|
2012 | ||
76 |
D. Balasubramanian, L. Schneper, M. Merighi, R. Smith, G. Narasimhan, S. Lory, and K. Mathee. The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes. PLoS One 7(3):e34067. |
|
75 |
R. Sautter, D. Ramos, O. Ciofu, A. Heydorn, N. Hoiby, A. Kharazmi, C. DeVries, D.E. Ohman, L. Schneper, and K. Mathee. A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production. Gene 498(2):242-53 |
|
74 |
E. Zeng, C.Ding, K. Mathee, L. Schneper, and G. Narasimhan. Gene function prediction and functional network: The role of gene ontology. Data Mining: Foundations and Intelligent Paradigms, 123-162 |
|
2011 | ||
73 |
V.L.A. Malladi, A.J. Sobczak, N. Maricic, S.K. Murugapiran, L. Schneper, J. Makemson, K. Mathee and S.F. Wnuk. Substituted lactam and cyclic azahemiacetals modulate Pseudomonas aeruginosa quorum sensing. BMC Bioorganic and Medicinal Chemistry. 19:5500-5506 [Co-corresponding author] |
|
72 |
C.Z. Li, K. Vandenberg, S. Prabhulkar, X. Zhu, L. Schneper, K. Mathee, C.J. Rosser, and E. Almeide. Paper based point-of-care testing disc for multiplex whole cell bacteria analysis. Biosensors and Bioelectronics 26:4342-8. |
|
71 |
K.G. Chan, S. Atkinson, K. Mathee, C.K. Sam, S.R. Chhabra, M. C�mara, C.L. Koh, and P. Williams. Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger) rhizosphere: co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia. BMC Microbiology 11:51.
|
|
70 |
D. Balasubramanian, K.F. Kong, S. Jayawardena, S. Leal, R. Sautter, and K. Mathee. Coregulation Featured in
|
|
2010 | ||
69 |
K.F. Kong, A. Aguila, L. Schneper, and K. Mathee. Pseudomonas aeruginosa β-lactamase induction requires two permeases, AmpG and AmpP. BMC
|
|
68 |
S. Cardenas, M. Scuri, L. Samsell, B. Ducatman, P. Bejarano, A. Auais, M. Doud, K. Mathee, and G. Piedimonte. Neurotropic and neuroimmune responses to early-life Pseudomonas aeruginosa infection in rat lungs. American Journal of Physiology – Lung Cellular and Molecular Physiology 299(3):L334-44. |
|
67 |
Z. Song, K.F Kong, H. Wu, N. Maricic, B. Ramalingam, H. Priestap, J.M.E. Quirke, N. Høiby, L. Schneper and K. Mathee. Panax ginseng has anti-infective activity against opportunistic pathogen Pseudomonas aeruginosa by inhibiting quorum sensing, a bacterial communication process critical for establishing infection. Phytomedicine |
|
66 |
M.S. Doud, M. Light, G. Gonzalez, G. Narsimhan, and K. Mathee. Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients. Human Genomics 4(3):147-169. |
|
2009 | ||
65 |
M. Herzberg, T. Rezene, C. Ziemba, O. Gillor, and K. Mathee. Impact of higher alginate expression on deposition of Pseudomonas aeruginosa in radial stagnation point flow and reverse osmosis systems. Environmental Science & Technology Journal 43(19):7376-7383. |
|
64 |
M.S. Doud, R. Grimes-Zeppegno, E. Molina, N. Miller, D. Balachandar, L. Schneper, R. Poppiti, and K. Mathee. A k2A-positive Klebsiella pneumoniae causes liver and brain abscess in a Saint Kitt’s man. International Journal of Medical Sciences 6(6):301-304. |
|
63 |
D. Balasubramanian, and K. Mathee. Comparative transcriptome analyses of Pseudomonas aeruginosa. Human Genomics 3(4):349-61. |
|
2008 | ||
62 |
E. Zeng, G. Narasimhan, L. Schneper, and K. Mathee. A functional network of yeast genes using gene ontology information. IEEE Conference on Bioinformatics and Biomedicine (BIBM2008) 343-346. |
|
61 |
H. Vedala, D.H. Kim, M. Doud, K. Mathee, and W. Choi. Effect of environmental factors on electrical conductivity of single oligo-DNA molecule measured using single-walled carbon nanotube nanoelectrodes. Nanotechnology 19:1-6 (265704) |
|
60 |
J. Entry, D. Mills, K. Mathee, K. Jayachandran, R.E. Sojka and G. Narasimhan. Influence of irrigated agriculture on soil microbial diversity. Applied Soil Ecology 40:146-154. |
|
59 |
A. Adonizio, S. Leal, F. Ausubel, and K. Mathee. Attenuation of Pseudomonas aeruginosa virulence by medicinal plants in a Caenorhabditis elegans model system. Journal of Medical Microbiology 57:809-813. |
|
58 |
A. L. Adonizio, K.F. Kong, and K. Mathee. Inhibition of quorum sensing-controlled virulence factor production in Pseudomonas aeruginosa by South Florida plant extracts. Antimicrobial Agents and Chemotherapy 52:198-203 |
|
57 |
K. Mathee, G. Narasimhan, C. Valdes, X. Qiu, J. M. Matewish , M. Koehrsen, A. Rokas, C. N. Yandava, R. Engels, E. Zeng, R. Olavarietta, M. Doud, R. Smith , P. Montgomery, J. White, P. A. Godfrey, C. Kodira, B. Birren, J. Galagan and S. Lory. Dynamics of Pseudomonas aeruginosa genome evolution. Proceedings of National Academy of Sciences USA 105(8):3100-3105. Highlighted by
|
|
56 |
S. Roy S, H. Vedala, A.D. Roy, D.H. Kim, M. Doud, K. Mathee, H.K. Shin, N. Shimamoto, V. Prasad and W. Choi. Direct electrical measurements on single-molecule genomic DNA using single-walled carbon nanotubes. Nano Letters 8:26-30. Highlighted by
|
|
2007 | ||
55 |
E. Zeng, K. Mathee, and G. Narasimhan. IEM: an algorithm for iterative enhancement of motifs using comparative genomics data. Comput |
|
54 |
D.K. Mills, J.A. Entry, K. Mathee, and P.M. Gillevet. Mini-Review: Assessing Microbial Community Diversity Using Amplicon Length Heterogeneity PCR. Soil Science Society of America Journal 71 March-April |
|
2006 | ||
53 |
L.I. Moreno, D. K. Mills, J. Entry, R.T. Sautter, and K. Mathee. Microbial metagenome profiling using Amplicon Length Heterogeneity-Polymerase Chain Reaction (ALH-PCR) proves more effective than elemental analysis in discriminating soil specimens. Journal of Forensic Science 51:1315-1322. |
|
52 |
D.K. Mills, J. A. Entry, J.D. Voss, P.M. Gillevet, and K. Mathee. An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices. FEMS Microbiological Ecology 57:496-503. |
|
51 |
A. L. Adonizio, K. Downum, B. C. Bennett, and K. Mathee. Anti-quorum sensing activity of medicinal plants in southern Florida. Journal of Ethnopharamocology 105:427-35. |
|
50 |
J. Makemson, A. Eberhard, and K. Mathee. Simple electrospray mass spectrometry detection of acylhomoserine lactones. Luminescence 21:1-6 |
|
49 |
C. Yang, D. Mills, K. Mathee, Y. Wang, K. Jayachandran, M. Sikaroodi, P. Gillevet, J. Entry, G. Narasimhan. Ecoinformatics tools for microbial diversity studies: Supervised classification of amplicon length heterogeneity (ALH) profiles of 16S rRNA. Journal of Microbiological Methods 65: 49-62. |
|
2005 | ||
48 |
K.F. Kong, S.R. Jayawardena, S. D. Indulkar, A. del Puerto, C-L. Koh, N. Høiby, and K. Mathee. Pseudomonas aeruginosa AmpR is a global transcriptional factor that regulates expression of AmpC and PoxB b-lactamases, proteases, quorum sensing and other virulence factors. Antimicrobial Agents and Chemotherapy 49:4567-75.
|
|
47 |
K.F. Kong, S.R. Jayawardena, A. Del Puerto, L. Wiehlmann, U. Laabs, B. Tummler, and K. Mathee. Characterization of poxB, a chromosomal-encoded Pseudomonas aeruginosa oxacillinase. Gene 358:82-92 |
|
46 |
Y. Wang, C. Yang, K. Mathee, and G. Narasimhan. Clustering using Adaptive Self-Organizing Maps (ASOM) and Applications. Lecture Notes in Computer Science 3515: 944-951. |
|
45 |
Y. Sun, Z. Deng, G. Narasimhan, and K. Mathee. Training set design for pattern discovery with applications to protein motif detection. Advances in Bioinformatics and its Applications: Series in Mathematical Biology and Medicine 8:240-251. |
|
44 |
C. Yang, E. Zeng, K. Mathee, and G. Narasimhan. Querying a database of regulatory elements. Advances in Bioinformatics and its Applications: Series in Mathematical Biology and Medicine 8:81-92. |
|
2004 | ||
43 |
A.P. Stapper, G. Narasimhan, D.E. Ohman, J. Barakat, M. Hentzer, S. Molin, A. Kharazmi, N. Høiby, K. Mathee. Alginate production affects Pseudomonas aeruginosa biofilm development and architecture, but is not essential for biofilm formation. Journal of Medical Microbiology 53:679-690.
|
|
42 |
X.H. Guo, Z.J. Song, H. Wu, P. Yan, X.J. Qin, K. Mathee, N. Høiby, B.J. Tang, X.Q. Qiu, Y.Q. Chen. Effects of pre-immunization with Bacillus Calmette Guerin vaccine on chronic P. aeruginosa lung infection in rats. Current Immunology 24:138-141. (In Chinese) |
|
2003 | ||
41 |
Z. Song, H. Wu, O. Ciofu, K.F. Kong, N. Høiby, J. Rygaard, A. Kharazmi, K. Mathee. Pseudomonas aeruginosa alginate is refractory to Th1 immune response and impedes host immune clearance in a mouse model of acute lung infection. Journal of Medical Microbiology 52:731-40. |
|
2002 | ||
40 |
G. Narasimhan, C. Bu, Y. Gao, X. Wang, N. Xu, K. Mathee. Mining protein sequences for motifs. Journal of Computational Biology 9:707-720. |
|
39 |
Z.J. Song, H. Wu, K. Mathee, N. Høiby, and A. Kharazmi. Gerimax ginseng regulates both humoral and cellular immunity during chronic Pseudomonas aeruginosa lung infection. Journal of Alternative and Complementary Medicine 8:459-466 |
|
2001 | ||
38 |
A. Morea, K. Mathee, M. J. Franklin, A. Giacomini, M. O’Regan and D. E. Ohman. Characterization of algG encoding C5-epimerase in the alginate biosynthetic gene cluster of Pseudomonas fluorescens. Gene 278:107-114. |
|
37 |
H, Wu, Z. Song, M. Givskov, G. Doring, D. Worlitzsch, K. Mathee, J. Rygaard, and N. Hoiby. Pseudomonas aeruginosa mutations in lasI and rhlI quorum sensing systems result in milder chronic lung infection. Microbiology 147:1105-1113. |
|
2000 | ||
36 |
S. Malhotra, L.A. Silo-Suh, K. Mathee, and D.E. Ohman. Proteome analysis of the effect of mucoid conversion on global protein expression in Pseudomonas aeruginosa strain PAO1 shows induction of disulfide bond isomerase, DsbA. Journal of Bacteriology 182:6999-7006. |
|
35 |
H. Wu, Song, Z.J., K. Mathee, M. Hentzer, J.B. Andersen, A. Heydorn, C. Moser, L. Eberl, S. Molin, N. Høiby, and M. Givskov. Detection of N-acylhomoserine lactones in lung tissues of mice infected with Pseudomonas aeruginosa. Microbiology 146:2481-2493. |
|
1999 | ||
34 |
K. Mathee, O. Ciofu, C. Sternberg, P.W. Lindum, J.I. Campbell, P. Jensen, A.H. Johnsen, M. Givskov, D.E. Ohman, S. Molin, N. Høiby, and A. Kharazmi. Mucoid conversion of Pseudomonas aeruginosa by hydrogen peroxide: a mechanism for virulence activation in the cystic fibrosis lung. Microbiology 145:1349-1357.
|
|
1997 | ||
33 |
K. Mathee, C.J. McPherson and D.E. Ohman. Posttranslational control of the algT (algU)-encoded s22 for expression of the |
|
1993 | ||
32 |
K. Mathee, and M.M. Howe. Bacteriophage Mu Mor protein requires s70 to activate the Mu middle promoter. Journal of Bacteriology 175:5314-5323. |
|
31 |
K. Mathee, and M.M. Howe. Function of the bacteriophage Mu middle operon. Virology 196:712-721. |
|
1990 | ||
30 |
K. Mathee, and M.M. Howe. Identification of a positive regulator of the Mu middle operon. Journal of Bacteriology 172:6641-6650. |
|
1985 | ||
29 |
K. Kalaimathee, C.L. Koh, and Y.F. Ngeow. Plasmid profiles of Neisseria gonorrhoeae in Peninsular Malaysia. Microbiology and Immunology 29:921-926. |
|
1984 | ||
28 |
C.L. Koh, K. Kalaimathee, and Y.F. Ngeow. Penicillinase-producing Neisseria gonorrhoeae in Peninsular Malaysia. Medical Journal of Malaysia 39:269-271. |
|
Proceedings |
||
2019 | ||
31 |
T. Cickovski, A. Manuel, K. Mathee, M. Campos, G. Narasimhan, (2019), Effects of Various Alpha-1 Antitrypsin Supplement Dosages on the Lung Microbiome and Metabolome ICCABS Proceedings, In Press. |
|
30 |
D. Ruiz-Perez, J. Lugo-Martinez, N. Bourguignon, K. Mathee, S. Bhansali, Z. Bar-Joseph, and G. Narasimhan (2019), Application of Bayesian Techniques to Multiomic Longitudinal Data, LatinX in AI Workshop at NeurIPS 2019. |
|
29 |
M. Sazal, D. Ruiz-Perez, C. Valdes, T. Cickovski, V. Stebliankin, A. Mehta, K. Mathee, and G. Narasimhan, Signed Bayesian Networks for Microbiomes, LatinX in AI Workshop at NeurIPS 2019. |
|
2018 | ||
28 |
D. Ruiz-Perez, H. Guan, P. Madhivanan, K. Mathee, and G. Narasimhan (2018). So you think you can PLS-DA? ICCABS Conference, Accepted for Publication. |
|
2013 | ||
27 |
M. Fernandez, M. Jaric, L. Schneper, J. Segal, E. Silva-Herzog, M. Campos, J. Fishman, M. Salathe, A.Wanner, J. Infante, K. Mathee, G. Narasimhan. A metagenomic approach to the airways microbiome of chronic obstructive pulmonary disease (COPD). Biomedical Engineering Conference (SBEC), 2013 29th Southern 151 – 152 [PR] |
|
2009 | ||
26 |
G. Gonzalez, M. Doud, K. Mathee and G. Narasimhan. Computer-assisted bacterial identification using 16S rRNA sequence data. Book series: FMBE Proceedings 24:239-249. [PR] |
|
2004 | ||
25 |
C. Yang, E. Zeng, K. Mathee, and G. Narasimhan. Mining Regulatory Elements in the Plasmodium falciparum genome using gene expression data. Proceedings of CAMDA’04: Critical Assessment of Microarray Data Analysis, Durham, NC, p16-20, November 2004. [PR] |
|
2003 | ||
24 |
C.L. Koh, M.L. Yap, Y.S. Ooi, M.E. Lim, and K. Mathee. Screening of environmental water samples from Malaysia for bacteria producing autoinducers and inhibitors of quorum sensing. Persatuan Genetik Malaysia; University of Malaya; Ministry of Science, Technology & the Environment, Malaysia; and Ministry of Health, Malaysia. 25-27 March 2003; Kuala Lumpur. Proceedings of the 5th National Congress of Genetics. p162-163. [NonPR] |
|
23 |
D. Ramos, A. Heydorn, C. Koh, K. Mathee. Loss of alginate production in mucoid Pseudomonas aeruginosa occurs via deregulation of the alternative sigma factor AlgT. Proceedings of the National Conference on Undergraduate Research (NCUR) 2003. p1-9 (9 pages). [PR] |
|
22 |
D. Mills, J.A. Entry, K. Mathee, K. Jayachandran, R.E. Sojka, W.J. Busscher. Irrigated agriculture and tillage practices impact microbial community structure. Proceedings of the International Soil Tillage Research Organization, 16th Triennial Conference, July 2003, Brisbane, Australia. p749-754. [NPR] |
|
1999 | ||
21 |
A Kharazmi, K Mathee, ET Jensen, S Molin, N Høiby. Polymorphonuclear leukocytes and Pseudomonas aeruginosa biofilm. Clinical Microbiology and Infection, 1999 |
|
20 |
Y. Gao, K. Mathee, G. Narasimhan, X. Wang. Motif Detection in Protein Sequences. Proceedings of SPIRE’99, Cancun, Mexico. p 63-72 (10 pages). [PR] |
|
Book Chapters |
||
2016 | ||
19 |
S. Pandey, K. Martins, and K. Mathee.Posttranslational regulation of antisigma factors of RpoE: a comparison between the Escherichia coli and Pseudomonas aeruginosasystems, p361-5. Invited Book Chapter. Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, 2 Volume Set Editor, F. de Bruijn ISBN: 978-1-119-00488-2 1472 pages. Wiley-Blackwell. |
|
18 |
H. Kumari, D. Balasubramanian, and K. Mathee. Role of small RNAs in Pseudomonas aeruginosa virulence and adaptation, p 383-392 Invited Book Chapter. Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, 2 Volume Set Editor, F. de Bruijn ISBN: 978-1-119-00488-2 1472 pages. Wiley-Blackwell. |
|
2015 | ||
17 |
M. Fernandez, V. Aguiar-Pulido, J. Riveros, W. Huang, J. Segal, E. Zeng, M. Campos, K. Mathee, E. Zeng, and G. Narasimhan, Microbiome Analysis: State-of-the-Art and Future Trends. Chapter 18 in Computational Methods for Next Generation Sequencing Data Analysis. Eds: Mandoiu and Zelikovsky, John Wiley and Sons, p333-351, 2015. |
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2013 | ||
16 |
D. Balasubramanian, S.K. Murugapiran, E. Silva-Herzog, L. Schenper, X. Yang, G. Tatke, G. Narasimhan and K. Mathee. Transcriptional regulatory Network in Pseudomonas aeruginosa. In Bacterial Gene Regulation and Transcriptional Networks. p195-248. M. Babu (Ed.), Horizon Press [PR] |
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2012 | ||
15 |
E. Zheng |
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2007 | ||
14 |
C. Yang, E. Zheng, K. Mathee, and G. Narasimhan. PlasmoTFBM: An intelligent queriable database for predicted transcription factor binding motifs in Plasmodium falciparum. Methods in Microarray Data Analysis V: 121-136. McConnell, Lin, Hurban (Eds.), Springer. [PR] |
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2002 | ||
13 |
K. Mathee, A. Kharazmi and N. Høiby. Role of exopolysaccharide in biofilm matrix formation: The alginate paradigm. In, Molecular Ecology of Biofilms: Genetic Analysis. P 23-56 Edited by R.J.C. McLean and A.W. Decho. Horizon Scientific Press. [NonPR] |
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1996 | ||
12 |
D.E. Ohman, D.E., K. Mathee, C.J. McPherson, C.A. DeVries, S. Ma, D.J. Wozniak and M. Franklin. Regulation of the alginate (algD) operon in Pseudomonas aeruginosa. In, Molecular biology of Pseudomonads. p472-483. Edited by T. Nakazawa, K. Furukawa, D. Haas, S. Silver. American Society for Microbiology, Washington, D.C. [NonPR] |
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Invited Extended Abstracts [NonPR]
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1999 | ||
12 |
K. Mathee, O. Ciofu, M. Givskov, D.E. Ohman, S. Molin, N. Høiby, and A. Kharazmi. Reactive oxygen species-mediated induction of Pseudomonas aeruginosa alginate production: a possible induction mechanism in cystic fibrosis lungs. Clinical Microbiology and Infection 5:5S8-9. |
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11 |
K. Mathee, O. Ciofu, M. Givskov, D.E. Ohman, S. Molin, N. Høiby, and A. Kharazmi. Reactive oxygen species-mediated induction of Pseudomonas aeruginosa alginate production: a possible induction mechanism in cystic fibrosis lungs. Clinical Microbiology and Infection 5:5S8-9. |
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10 |
A. Kharazmi, K. Mathee, E. T. Jensen, S. Molin and N. Høiby. Polymorphonuclear leukocytes and Pseudomonas aeruginosa biofilms. Clinical Microbiology and Infection 5:5S27-28. |
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9 |
D.E. Ohman, S. Malhotra, S. Jain, K. Mathee, and L. A Silo-Suh. Alginate biosynthesis in Pseudomonas aeruginosa: a stress response. Clinical Microbiology and Infection 5:5S11-13. |
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Other Publications/Books [NonPR]
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13 |
B. Colbert, H. Kumari, A. Pinon, L. Frey, S. Pandey, and K. Mathee. Alginate-regulating genes are identified in the clinical cystic fibrosis isolate of Pseudomonas aeruginosa PA2192. bioRxiv 319004; doi: https://doi.org/10.1101/319004. (2018) | |
12 |
A. Gurkar, D. Balasubramanian, J. Manur, K. Mathee. Potential application of phage therapy for prophylactic treatment against Pseudomonas aeruginosa biofilm Infections. bioRxiv 404145; doi: https://doi.org/10.1101/404145 (2018) | |
11 |
K. Mathee, and N. Mohana-Kumaran. Program and Conference Proceedings: 17th Biennial Pseudomonas Conference: Pseudomonas 2019. 211 pages. | |
10 |
K. Mathee, and N. Mohana-Kumaran. Programme and Conference Proceedings: 15th Asian Conference on Transcription (ACT-XV). 102 pages. (2017) | |
9 |
K. Mathee, S. M Leal, E. Newman. Characterization of L-serine deaminases, SdaA (PA2448) and SdaB (PA5379), and their potential role in Pseudomonas aeruginosa pathogenesis bioRxiv 394957; doi: https://doi.org/10.1101/394957. (2018) | |
8 |
K. Mathee, Summary of the 1st international conference on Tropical Diseases organized by UniKL. In PetriDish. (2012) | |
7 |
K. Mathee. Magic of Life. Article written for the Sequentia Exhibit at the Patricia and Phillip Frost Art Museum, October 2010-January 2011; http://www.xaviercortada.com/event/id/69469/Sequentia-a-solo-exhibit-at-the-Frost-Art-Museum.htm | |
6 |
K. Mathee, C.L. Koh, and M. T.J. Ai. Bacteria cell-to-cell communication: A laboratory manual. “Akademi Sains Malaysia”. 38 pages. 2000 | |
5 |
K. Mathee, and C.L. Koh. Program and Abstract Book: 7th Asian Conference on Transcription (ACT-VII). 55 pages. 2002 | |
Editorials |
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6 |
T. Parish, M. Harris, N. Fry, K. Mathee, M.E. Trujillo, S. Bentley S, and N. Thomson. DORA Editorial on Impact factors appeared in the following journal
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5 |
M. N. Schroth, J. J. Cho, S. K. Green1 and S. D. Kominos (2018). Epidemiology of Pseudomonas aeruginosa in agricultural areas. Journal of Medical Microbiology 67:1191–1201 DOI 10.1099/jmm.0.000758. “This article is a republication of a chapter from Pseudomonas aeruginosa: Ecological Aspects and Patient Colonization, edited by Viola Mae Young, Raven Press, New York, 1977. This abstract has been created by the Microbiology Society and was written by Kalai Mathee and Milton Schroth.” |
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4 |
K. Mathee. (2018) Forensic investigation into the origin of Pseudomonas aeruginosa PA14 — old but not lost. Journal of Medical Microbiology August 67:1019–1021 DOI 10.1099/jmm.0.000778 |
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3 |
K. Hardie, N.M. Kumaran, and K. Mathee. Three decades of promoting the beauty and impact of transcription. Microbiology Today, p34, February 18 issue |
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2 |
N.K. Fry, and K. Mathee. Journal of Medical Microbiology news. Microbiology Today, p34, February 18 issue |
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1 |
N.K. Fry, and K. Mathee. Welcome from Norman Fry and Kalai Mathee, new co-Editors-in-Chief for the Journal of Medical Microbiology. Journal of Medical Microbiology Jul;66(7):846. doi: 10.1099/jmm.0.000520. PMID: 28759351 |
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Theses and Dissertation |
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4 |
Bacteriophage Mu middle operon (1992) PhD Dissertation. University of Tennessee Medical School Memphis, Tennessee Mentor: Prof. Martha M. Howe |
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3 |
Plasmids in Neisseria gonorrhoeae isolates (1986)M. Sc Thesis, University of Malaya, Malaysia. Mentor: Prof. Chong-Lek Koh |
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2 |
Evaluation of F1 crossbred (Local X German Fawn) for breeding soundness and effect of storage on semen quality (1984) Honors Thesis, University of Malaya, Malaysia. Mentor: Prof. T.K. Mukharjee |
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Publications Outside Discipline |
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1 |
K. Mathee. Women in Science: A personal Reflection. FIU Diversity Exchange Magazine, Spring 2001. p12-13. |
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Book |
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1 |
The Rev. Dr. Martin Luther King, Jr. Collection Hardcover – March 31, 2016 by Jonathan Segal, Brett Colbert Kalai Mathee |