Lab Members

Our principal investigator, current students and visiting scholars, and the alumni who have gone on to positions around the world.

Principal Investigator

Photo of Prem Chapagain

Prem Chapagain

Prem Chapagain is a Professor of Physics at Florida International University and Associate Director of the Biomolecular Sciences Institute. His research combines physics-based molecular simulation, structural biology, and artificial intelligence to understand how biomolecules move, interact, and function. His group applies these computational and machine-learning approaches to problems in biology and drug discovery with direct relevance to human health, from viral assembly and antibiotic resistance to RNA-targeted therapeutics. He is particularly interested in harnessing emerging AI technologies to accelerate how we understand and design biological systems.

He has been recognized by a number of teaching and research awards, including the 2022 Faculty Senate Award for Faculty Excellence in Research and the 2019 Faculty Senate Award for Faculty Excellence in Teaching. Dr. Chapagain has a highly successful record of teaching and mentoring both graduate and undergraduate students.

ORCID 0000-0002-0999-4975  ·  chapagap@fiu.edu

Theoretical Biophysics at FIU includes two faculty (Gerstman & Chapagain). Dr. Gerstman’s page can be accessed here.

PhD Students

Sadeq Shobani

PhD Student · Biological Sciences

Bacterial cell wall

Expected 2027

Prabin Dahal

PhD Student · Physics

Friedreich’s ataxia (FRDA)

Expected 2029

Jeanpierre Fuente

PhD Student · Biochemistry

DNA repair

Expected 2029

Andy Tavel

PhD Student · Biochemistry

RNA–protein interactions

Expected 2029

Laxmi Chataut

PhD Student · Physics

Circular RNA

Expected 2029

Bhaskar Joshi

PhD Student · Physics

Peptide design

Expected 2030

Garima Joshi

PhD Student · Physics

Glycoproteins

Incoming · expected 2031

Postdocs & Visiting Scholars

  • Dr. Samuel PitaVisiting Associate Professor2025–2026 Current
  • Dr. Yasir MamunCourtesy Postdoc2025–present Current
  • Dr. Chooda KhanalCourtesy Postdoc2024–2025
  • Dr. Elumalai PavadaiPostdoc2016–2018
  • Dr. Narayan AdhikariAPS International Fellow2011

Undergraduate & High School Researchers

Current undergraduates

  • Chancelin Dixon (Florida Heart Research Fellow)
  • Haniel Louijuste Perez
  • David Hernandez
  • Jaed Pizzaro

High school summer interns

  • Konstantina Papadaki (2025)
  • Meyli Lopez (2024)
  • Samaira Chaddah (2024)
  • Ankith Sureddi (2023)
  • Emily Brown (2023)
  • Eliza Lannon (2022)

Past undergraduates

  • Konstantina Papadaki (SRI)
  • Oscar Delgado
  • Aakash Shrestha
  • Ally Aguado
  • Anjani Mogallur
  • Briana Gonzalez
  • Jayleen De La Rosa
  • Daniel Diaz
  • Polina Evdokimova
  • Cathy Padilla
  • Yumi Mendez
  • Jonathan Najman
  • William Castillo
  • Nadia Lupiano
  • Karina Falcone
  • Ilan Chemamma
  • Zubair Awan
  • Camila Uzcategui
  • Rojesh Shakya
  • Benjamin Gross
  • Ana Preza
  • and others

PhD Alumni

NameDegreeResearchCurrently
Ukesh Karki PhD 2026Physics A-to-I RNA editing Postdoc, Johns Hopkins University
Hugo Perez PhD 2025Physics Antibiotic peptides Postdoc, University of Delaware
Yasir Mamun PhD 2024Biochemistry Topoisomerases Faculty, Nova Southeastern University
Michael Cioffi PhD 2024Physics VP40–membrane interactions Postdoc, University of Miami
Tej Sharma PhD 2024Physics VP40 Postdoc, SUNY Buffalo
Md. Lokman Hossen PhD 2022Physics Viral proteins Faculty, University of Barishal, Bangladesh
Prabin Baral PhD 2022Physics Epitope screening Postdoc, University of Maryland
Chandra Dhakal PhD 2022Physics Fluorescent proteins Nepal
Nisha Bhattarai PhD 2021Physics Marburg VP40 Postdoc, Case Western Reserve University Real Triumph Graduate
Rudramani Pokhrel PhD 2020Physics Antimicrobial peptides Bioinformatics Core, Arizona State University Real Triumph Graduate
Jeevan GC PhD 2017Physics Transformer proteins Postdoc, Washington State University Worlds Ahead Graduate
Timothy Steckmann PhD 2016Physics Amyloid beta Formerly adjunct faculty, FIU
Chola Regmi PhD 2014Physics Fluorescent proteins Data scientist, Texas state government Worlds Ahead Graduate
Yuba Bhandari PhD 2013Physics Lattice models Postdoc, Johns Hopkins University Worlds Ahead Graduate