Molecular biology

is it a boy or a girl?

Posted by | DNA, Evolution, Genetics, Molecular biology, Research | No Comments

Sex determination is an extraordinarily complex mechanism. During this process, signals of different nature (genetic, epigenetic, environmental, etc.) interact with each other, often in a hierarchical manner, to produce a male or a female embryo. Historically, the study of sex determination has relied on insect models (specially the fruit fly Drosophila) due to their short generation time as well as to the presence of very well developed genetic toolkits.

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Ten years ago we started a collaboration focused on this topic with the laboratory of Dr. Lucas Sanchez at the CIB-CSIC (Spanish Research Council, Madrid), investigating the evolution of the different components (proteins and genes) of the sex determination cascade in insects. Our latest results on this subject have been published this week by the journal Genetics. In this work we describe an unusual variation in the sex determination mechanism of sciara flies (gnats). More specifically, we find that the gene doublesex (responsible for discriminating between male-specific and female-specific developmental plans) does not seem to play that role in these insects, as suggested by the presence of non sex-specific doublesex transcripts in both males and females. This feature sets Sciara apart from other insects, revealing not only their divergent nature but also the extreme plasticity of sex determination mechanisms in nature.

Ciro Rivera-Casas’ PhD dissertation is finished!

Posted by | Chromatin, DNA, Education, Genetics, Histones, Molecular biology, Research | No Comments

Our own Ciro Rivera-Casas is about to defend his Ph.D. dissertation! we’re really excited after checking the final printed copy of his work! During the last 5 years, Ciro has been focused on the characterization of histone variants in marine invertebrates and the methodologies for the study of chromatin in these organisms. Along the way, he has discovered several interesting and unexpected features of these proteins that soon will be published as part of his Ph.D. work. Congratulations to Ciro and best of luck for the defense of his work this summer!

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Environmental application of the “omic” study of marine organisms

Posted by | Chromatin, Histones, Molecular biology, Omics, Research | No Comments

Our latest work entitled “Bivalve omics: state of the art and potential applications for the biomonitoring of harmful marine compounds” has been published last week in the journal “Marine Drugs”. This work is part of Victoria Suarez-Ulloa’s Ph.D. project, and aims to provide a timely perspective on the available resources and on the current and prospective applications for the biomonitoring of harmful marine compounds.

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Computational methods for studying gene expression in molluscs

Posted by | Bioinformatics, Molecular biology, Omics, Technology | No Comments

Our collaboration with the RNASA-IMEDIR Research Group at the Department of Information and Communication Technologies in the University of A Coruna (Spain) has produced a new paper recently published in the Journal Lecture Notes in Computer Science (7902:453-462). In this work, the performance of different clustering techniques is evaluated for the analysis of gene expression patterns in the mussel Mytilus

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